Paquet : ssake (4.0.1-2)

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genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

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dépendances

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dep: libperl4-corelibs-perl

libraries historically supplied with Perl 4
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)

sug: ssake-examples

example data for SSAKE, a genomic assembler of short reads

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	47,6 ko	215,0 ko	[liste des fichiers]