Paket: ssake (4.0.1-2)

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genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

Andra paket besläktade med ssake

beror

rekommenderar

föreslår

enhances

dep: libperl4-corelibs-perl

libraries historically supplied with Perl 4
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)

sug: ssake-examples

example data for SSAKE, a genomic assembler of short reads

Hämta ssake

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	47,6 kbyte	215,0 kbyte	[filförteckning]