Paquet : e-mem (1.0.1-5 et autres)

Liens pour e-mem

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Télécharger le paquet source e-mem :

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Ressources externes :

Page d'accueil [www.csd.uwo.ca]

Paquets similaires :

Efficient computation of Maximal Exact Matches for very large genomes

E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided.

Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance.

Autres paquets associés à e-mem

dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 13.1) [arm64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 5.2) [amd64]

enh: mummer

Efficient sequence alignment of full genomes

Télécharger e-mem

Télécharger pour toutes les architectures proposées
Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	1.0.1-5	34,0 ko	106,0 ko	[liste des fichiers]
arm64	1.0.1-5+b2	31,6 ko	99,0 ko	[liste des fichiers]