eLxr packages [ bianca ]
[ Paquet source : bifrost ]
Paquet : libbifrost0 (1.3.1-1 et autres)
Liens pour libbifrost0
Télécharger le paquet source bifrost :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
library for parallel construction, indexing and querying of de Bruijn graphs
Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
Autres paquets associés à libbifrost0
|
|
|
|
-
- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
-
- dep: libgcc-s1 (>= 3.0) [arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64]
-
- dep: libstdc++6 (>= 13.1) [amd64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [arm64]
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Télécharger libbifrost0
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 1.3.1-1 | 417,9 ko | 1 436,0 ko | [liste des fichiers] |
| arm64 | 1.3.1-1+b1 | 384,9 ko | 1 325,0 ko | [liste des fichiers] |