eLxr packages [ bianca ]
[ 原始碼： bifrost ]
套件：libbifrost0（1.3.1-1 以及其他的）
library for parallel construction, indexing and querying of de Bruijn graphs
Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
其他與 libbifrost0 有關的套件
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- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libgcc-s1 (>= 3.0) [arm64]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [amd64]
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- dep: libstdc++6 (>= 13.1) [amd64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [arm64]
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime