Paquet : libfreecontact-perl (0.08-10)

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fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

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dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libfreecontact0t64 (>= 1.0.21)

fast protein contact predictor library
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: perl (>= 5.40.1-3)

Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.40.1

paquet virtuel fourni par perl-base

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	61,9 ko	208,0 ko	[liste des fichiers]
arm64	60,2 ko	224,0 ko	[liste des fichiers]