Pacote: libfreecontact-perl (0.08-10)

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Rastreador de patch eLxr

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Pagina principal [rostlab.org]

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fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

Outros pacotes relacionados a libfreecontact-perl

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dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
dep: libfreecontact0t64 (>= 1.0.21)

fast protein contact predictor library
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: perl (>= 5.40.1-3)

Larry Wall's Practical Extraction and Report Language
dep: perlapi-5.40.1

pacote virtual fornecido por perl-base

Download de libfreecontact-perl

Baixe para todas as arquiteturas disponíveis
Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	61.9 kB	208.0 kB	[lista de arquivos]
arm64	60.2 kB	224.0 kB	[lista de arquivos]