eLxr packages [ bianca ]
[ Paquet source : ngmlr ]
Paquet : ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2 et autres)
Liens pour ngmlr
Télécharger le paquet source ngmlr :
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Autres paquets associés à ngmlr
|
|
|
|
-
- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 11) [amd64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 13.1) [arm64]
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Télécharger ngmlr
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 0.2.7+git20210816.a2a31fb+dfsg-2+b1 | 673,7 ko | 1 157,0 ko | [liste des fichiers] |
| arm64 | 0.2.7+git20210816.a2a31fb+dfsg-2+b2 | 655,1 ko | 1 173,0 ko | [liste des fichiers] |