eLxr packages [ bianca ]
[ Source: ngmlr ]
Пакунок: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2 and others)
Links for ngmlr
Download Source Package ngmlr:
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc]
- [ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz]
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
CoNvex Gap-cost alignMents for Long Reads
Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.
Інші пакунки пов'язані з ngmlr
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- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 11) [amd64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 13.1) [arm64]
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Завантажити ngmlr
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| amd64 | 0.2.7+git20210816.a2a31fb+dfsg-2+b1 | 673.7 kB | 1,157.0 kB | [список файлів] |
| arm64 | 0.2.7+git20210816.a2a31fb+dfsg-2+b2 | 655.1 kB | 1,173.0 kB | [список файлів] |