Paquet : python3-dna-jellyfish (2.3.1-4 et autres)

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Télécharger le paquet source jellyfish :

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Page d'accueil [www.genome.umd.edu]

Paquets similaires :

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Autres paquets associés à python3-dna-jellyfish

dépendances

recommandations

suggestions

enhances

dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libjellyfish-2.0-2 (>= 2.3.1)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.14)

dep: python3 (>= 3.13~)

Télécharger python3-dna-jellyfish

Télécharger pour toutes les architectures proposées
Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	2.3.1-4+b1	55,7 ko	186,0 ko	[liste des fichiers]
arm64	2.3.1-4+b1	54,8 ko	239,0 ko	[liste des fichiers]