eLxr packagesPacote: python3-dna-jellyfish (2.3.1-4 e outros)
Links para python3-dna-jellyfish
Baixe o pacote-fonte jellyfish:
Mantenedores(as):
Fontes externas:
- Pagina principal [www.genome.umd.edu]
Pacotes similares:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Outros pacotes relacionados a python3-dna-jellyfish
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libjellyfish-2.0-2 (>= 2.3.1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.14)
- dep: python3 (>= 3.13~)
Download de python3-dna-jellyfish
| Arquitetura | Versão | Tamanho do pacote | Tamanho instalado | Arquivos |
|---|---|---|---|---|
| amd64 | 2.3.1-4+b1 | 55.7 kB | 186.0 kB | [lista de arquivos] |
| arm64 | 2.3.1-4+b1 | 54.8 kB | 239.0 kB | [lista de arquivos] |