Paquet : assemblytics (1.2.1+dfsg-2)

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Page d'accueil [assemblytics.com]

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detect and analyze structural variants from a genome assembly

Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.

Autres paquets associés à assemblytics

dépendances

recommandations

suggestions

enhances

dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-numpy

Python library for numerical computations (Python 3)
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-rcolorbrewer

GNU R package providing suitable color palettes

rec: mummer

Efficient sequence alignment of full genomes

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	18,2 ko	84,0 ko	[liste des fichiers]