eLxr packagesPaquet : wtdbg2 (2.5-10)
Liens pour wtdbg2
Télécharger le paquet source wtdbg2 :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
de novo sequence assembler for long noisy reads
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy.
During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers.
Autres paquets associés à wtdbg2
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
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- dep: zlib1g (>= 1:1.2.0)
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- sug: minimap2
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- sug: perl
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- sug: wtdbg2-examples
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Télécharger wtdbg2
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 697,2 ko | 6 863,0 ko | [liste des fichiers] |