eLxr packages [ aria ]
[ ソース: canu ]
パッケージ: canu (2.0+dfsg-2 など)
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
* Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
その他の canu 関連パッケージ
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- dep: gnuplot
- Command-line driven interactive plotting program.
以下のパッケージによって提供される仮想パッケージでもあります: gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libfilesys-df-perl
- Module to obtain filesystem disk space information
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: mhap
- パッケージは利用できません
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: nanopolish
- パッケージは利用できません
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- sug: pbgenomicconsensus
- パッケージは利用できません