eLxr packages [ bianca ]
[ ソース: bitseq ]
パッケージ: bitseq (0.7.5+dfsg-6)
Bayesian Inference of Transcripts from Sequencing Data
BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.
その他の bitseq 関連パッケージ
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Python library for numerical computations (Python 3)
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
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- sug: samtools
- processing sequence alignments in SAM, BAM and CRAM formats