eLxr packages [ bianca ]
[ ソース: provean ]
パッケージ: provean (1.1.5+ds-5)
Protein Variation Effect Analyzer
PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.
PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important.
The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2.
A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse.
その他の provean 関連パッケージ
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools