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[ Pakiet źródłowy: jellyfish ]
Pakiet: jellyfish (2.3.1-4 i inne)
Odnośniki dla jellyfish
Pobieranie pakietu źródłowego jellyfish:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [www.genome.umd.edu]
Podobne pakiety:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Inne pakiety związane z jellyfish
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.1-4+b1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
Pobieranie jellyfish
| Architektura | Wersja | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|---|
| amd64 | 2.3.1-4+b1 | 788,6 KiB | 2 527,0 KiB | [lista plików] |
| arm64 | 2.3.1-4+b1 | 709,1 KiB | 2 511,0 KiB | [lista plików] |