Paket: jellyfish (2.3.1-4 und andere)

Links für jellyfish

eLxr Patch-Überblick

Quellcode-Paket jellyfish herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [www.genome.umd.edu]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

Andere Pakete mit Bezug zu jellyfish

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libjellyfish-2.0-2 (= 2.3.1-4+b1)

count k-mers in DNA sequences (dynamic library of jellyfish)
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3

jellyfish herunterladen

Download für alle verfügbaren Architekturen
Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	2.3.1-4+b1	788,6 kB	2.527,0 kB	[Liste der Dateien]
arm64	2.3.1-4+b1	709,1 kB	2.511,0 kB	[Liste der Dateien]