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[ Fonte: ggd-utils  ]

Pacote: ggd-utils (1.0.0+ds-1 e outros)

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programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Outros pacotes relacionados a ggd-utils

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Download de ggd-utils

Baixe para todas as arquiteturas disponíveis
Arquitetura Versão Tamanho do pacote Tamanho instalado Arquivos
amd64 1.0.0+ds-1+b17 2,207.2 kB6,605.0 kB [lista de arquivos]
arm64 1.0.0+ds-1+b17 1,894.2 kB6,162.0 kB [lista de arquivos]