[ aria ]
[ bianca ]
[ Quellcode: ariba ]
Paket: ariba (2.14.6+ds-5 und andere)
Links für ariba
Quellcode-Paket ariba herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Andere Pakete mit Bezug zu ariba
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- Paket nicht verfügbar
-
- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
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- dep: libfml0 (>= 0.1)
- Paket nicht verfügbar
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
-
- dep: libminimap0 (>= 0.2)
- Paket nicht verfügbar
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: mash
- Paket nicht verfügbar
-
- dep: mummer
- Paket nicht verfügbar
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
-
- dep: python3-biopython
- Paket nicht verfügbar
-
- dep: python3-bs4
- error-tolerant HTML parser for Python 3
-
- dep: python3-dendropy
- Paket nicht verfügbar
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-pymummer
- Paket nicht verfügbar
-
- dep: python3-pysam
- Paket nicht verfügbar
-
- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- sug: spades
- Paket nicht verfügbar
ariba herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| amd64 | 2.14.6+ds-5+b1 | 1.909,9 kB | 20.451,0 kB | [Liste der Dateien] |