Paketti: seqan-raptor (3.0.1+ds-9)

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Imuroi lähdekoodipaketti seqan-raptor:

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Kotisivu [github.com]

Samankaltaisia paketteja:

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

Muut pakettiin seqan-raptor liittyvät paketit

depends

recommends

suggests

enhances

dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: libyaml-cpp0.8 (>= 0.7.0)

YAML parser and emitter for C++
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

sug: cwl-runner

näennäispaketti, jonka toteuttaa cwltool, toil

Imuroi seqan-raptor

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	679.0 kt	2,216.0 kt	[tiedostoluettelo]
arm64	576.8 kt	2,040.0 kt	[tiedostoluettelo]