eLxr packages [ bianca ]
[ Источник: seqan-raptor ]
Пакет: seqan-raptor (3.0.1+ds-9)
Ссылки для seqan-raptor
Исходный код seqan-raptor:
- [seqan-raptor_3.0.1+ds-9.debian.tar.xz]
- [seqan-raptor_3.0.1+ds-9.dsc]
- [seqan-raptor_3.0.1+ds.orig.tar.xz]
Сопровождающие:
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
pre-filter for querying very large collections of nucleotide sequences
Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.
Другие пакеты, относящиеся к seqan-raptor
|
|
|
|
-
- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
-
- dep: libyaml-cpp0.8 (>= 0.7.0)
- YAML parser and emitter for C++
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- sug: cwl-runner
- виртуальный пакет, предоставляемый cwltool, toil
Загрузка seqan-raptor
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 679,0 Кб | 2 216,0 Кб | [список файлов] |
| arm64 | 576,8 Кб | 2 040,0 Кб | [список файлов] |