Paketti: skesa (2.4.0-6 ja muut)

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eLxr Patch Tracker

Imuroi lähdekoodipaketti skesa:

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External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

Muut pakettiin skesa liittyvät paketit

depends

recommends

suggests

enhances

dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libboost-program-options1.83.0 (>= 1.83.0)

program options library for C++
dep: libboost-timer1.83.0 (>= 1.83.0)

C++ wall clock and CPU process timers
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libncbi-vdb3 (>= 3.0.2+dfsg)

libraries for using data in the INSDC Sequence Read Archives
dep: libngs-c++3 (>= 3.0.3+dfsg)

Next Generation Sequencing language Bindings (C++ runtime)
dep: libstdc++6 (>= 13.1) [amd64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 14) [arm64]

Imuroi skesa

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.4.0-6+b2	558.0 kt	2,350.0 kt	[tiedostoluettelo]
arm64	2.4.0-6+b3	568.5 kt	2,230.0 kt	[tiedostoluettelo]