Pacote: skesa (2.4.0-6 e outros)

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Rastreador de patch eLxr

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strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

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dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libboost-program-options1.83.0 (>= 1.83.0)

program options library for C++
dep: libboost-timer1.83.0 (>= 1.83.0)

C++ wall clock and CPU process timers
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libncbi-vdb3 (>= 3.0.2+dfsg)

libraries for using data in the INSDC Sequence Read Archives
dep: libngs-c++3 (>= 3.0.3+dfsg)

Next Generation Sequencing language Bindings (C++ runtime)
dep: libstdc++6 (>= 13.1) [amd64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 14) [arm64]

Download de skesa

Baixe para todas as arquiteturas disponíveis
Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	2.4.0-6+b2	558.0 kB	2,350.0 kB	[lista de arquivos]
arm64	2.4.0-6+b3	568.5 kB	2,230.0 kB	[lista de arquivos]