eLxr packages [ bianca ]
[ Источник: skesa ]
Пакет: skesa (2.4.0-6 и другие)
Ссылки для skesa
Исходный код skesa:
Сопровождающие:
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
strategic Kmer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.
Другие пакеты, относящиеся к skesa
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
-
- dep: libboost-program-options1.83.0 (>= 1.83.0)
- program options library for C++
-
- dep: libboost-timer1.83.0 (>= 1.83.0)
- C++ wall clock and CPU process timers
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libncbi-vdb3 (>= 3.0.2+dfsg)
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libngs-c++3 (>= 3.0.3+dfsg)
- Next Generation Sequencing language Bindings (C++ runtime)
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- dep: libstdc++6 (>= 13.1) [amd64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [arm64]
Загрузка skesa
| Архитектура | Версия | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|---|
| amd64 | 2.4.0-6+b2 | 558,0 Кб | 2 350,0 Кб | [список файлов] |
| arm64 | 2.4.0-6+b3 | 568,5 Кб | 2 230,0 Кб | [список файлов] |