[ aria ]
[ bianca ]
[ Paquet source : augur ]
Paquet : augur (20.0.0-1)
Liens pour augur
Télécharger le paquet source augur :
Responsables :
Ressources externes :
- Page d'accueil [github.com]
Paquets similaires :
pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.
nextstrain is comprised of three components:
* fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences
Autres paquets associés à augur
|
|
|
|
-
- dep: fasttree
- Paquet indisponible
-
- dep: mafft
- Paquet indisponible
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-bcbio-gff
- Paquet indisponible
-
- dep: python3-biopython
- Paquet indisponible
-
- dep: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
-
- dep: python3-cvxopt
- Paquet indisponible
-
- dep: python3-dendropy
- Paquet indisponible
-
- dep: python3-ipdb
- Paquet indisponible
-
- dep: python3-isodate
- Paquet indisponible
-
- dep: python3-jsonschema
- An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-packaging
- core utilities for python3 packages
-
- dep: python3-pandas
- Paquet indisponible
-
- dep: python3-pyfastx
- Paquet indisponible
-
- dep: python3-schedule
- Paquet indisponible
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-seaborn
- Paquet indisponible
-
- dep: python3-treetime (>= 0.9.4)
- Paquet indisponible
-
- dep: python3-xopen (>= 1.7.0-1~)
- Paquet indisponible
-
- dep: python3-zstandard
- Paquet indisponible
-
- dep: raxml
- Paquet indisponible
-
- dep: seqmagick
- Paquet indisponible
-
- dep: vcftools
- Paquet indisponible
-
- rec: iqtree
- Paquet indisponible
Télécharger augur
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| all | 182,9 ko | 829,0 ko | [liste des fichiers] |