[ aria ]
[ bianca ]
[ Source: augur ]
Package: augur (20.0.0-1)
Links for augur
Download Source Package augur:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.
nextstrain is comprised of three components:
* fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences
Other Packages Related to augur
|
|
|
|
-
- dep: fasttree
- Package not available
-
- dep: mafft
- Package not available
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-bcbio-gff
- Package not available
-
- dep: python3-biopython
- Package not available
-
- dep: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
-
- dep: python3-cvxopt
- Package not available
-
- dep: python3-dendropy
- Package not available
-
- dep: python3-ipdb
- Package not available
-
- dep: python3-isodate
- Package not available
-
- dep: python3-jsonschema
- An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-packaging
- core utilities for python3 packages
-
- dep: python3-pandas
- Package not available
-
- dep: python3-pyfastx
- Package not available
-
- dep: python3-schedule
- Package not available
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-seaborn
- Package not available
-
- dep: python3-treetime (>= 0.9.4)
- Package not available
-
- dep: python3-xopen (>= 1.7.0-1~)
- Package not available
-
- dep: python3-zstandard
- Package not available
-
- dep: raxml
- Package not available
-
- dep: seqmagick
- Package not available
-
- dep: vcftools
- Package not available
-
- rec: iqtree
- Package not available
Download augur
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 182.9 kB | 829.0 kB | [list of files] |