eLxr packages [ bianca ]
[ Paquet source : stringtie ]
Paquet : stringtie (2.2.1+ds-3 et autres)
Liens pour stringtie
Télécharger le paquet source stringtie :
- [stringtie_2.2.1+ds-3.debian.tar.xz]
- [stringtie_2.2.1+ds-3.dsc]
- [stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.2.1+ds.orig.tar.xz]
Responsables :
Ressources externes :
- Page d'accueil [ccb.jhu.edu]
Paquets similaires :
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Autres paquets associés à stringtie
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- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC support library
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: stringtie-examples
- Paquet indisponible
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- sug: cufflinks
- Paquet indisponible
Télécharger stringtie
| Architecture | Version | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|---|
| amd64 | 2.2.1+ds-3+b1 | 404,4 ko | 1 025,0 ko | [liste des fichiers] |
| arm64 | 2.2.1+ds-3+b2 | 363,9 ko | 1 005,0 ko | [liste des fichiers] |