eLxr packages [ bianca ]
[ Quellcode: stringtie ]
Paket: stringtie (2.2.1+ds-3 und andere)
Links für stringtie
Quellcode-Paket stringtie herunterladen:
- [stringtie_2.2.1+ds-3.debian.tar.xz]
- [stringtie_2.2.1+ds-3.dsc]
- [stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.2.1+ds.orig.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [ccb.jhu.edu]
Ähnliche Pakete:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Andere Pakete mit Bezug zu stringtie
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- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC support library
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: stringtie-examples
- Paket nicht verfügbar
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- sug: cufflinks
- Paket nicht verfügbar
stringtie herunterladen
| Architektur | Version | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|---|
| amd64 | 2.2.1+ds-3+b1 | 404,4 kB | 1.025,0 kB | [Liste der Dateien] |
| arm64 | 2.2.1+ds-3+b2 | 363,9 kB | 1.005,0 kB | [Liste der Dateien] |