eLxr packages [ bianca ]
[ ソース: abyss ]
パッケージ: abyss (2.3.10-1 など)
de novo, parallel, sequence assembler for short reads
ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.
その他の abyss 関連パッケージ
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- dep: bsdextrautils
- extra utilities from 4.4BSD-Lite
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- dep: libc6 (>= 2.38)
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libopenmpi40 (>= 5.0.6)
- high performance message passing library -- shared library
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- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 shared library
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- dep: libstdc++6 (>= 14)
- GNU Standard C++ Library v3
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- dep: make
- utility for directing compilation
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- dep: openmpi-bin
- high performance message passing library -- binaries
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- dep: openmpi-common
- high performance message passing library -- common files
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- dep: perl
- Larry Wall's Practical Extraction and Report Language