eLxr packagesPaket: augustus (3.5.0+dfsg-2)
augustus için bağlantılar
augustus Kaynak Paketini İndir:
Geliştiriciler:
Dış Kaynaklar:
- Ana Sayfa [bioinf.uni-greifswald.de]
Benzer paketler:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
augustus ile İlgili Diğer Paketler
|
|
|
|
-
- dep: augustus-data
- data files for AUGUSTUS
-
- dep: libbamtools2.5.2 (>= 2.5.2+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
-
- dep: libcolamd2 (>= 1:4.5.2)
- column approximate minimum degree ordering library for sparse matrices
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 4.5) [arm64]
-
- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
-
- dep: libhts3 (>= 1.10)
- Paket mevcut değil
-
- dep: libmariadb3 (>= 3.0.0)
- MariaDB database client library
-
- dep: libmysql++3v5 (>= 3.2.5-1~)
- Paket mevcut değil
-
- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 shared library
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- rec: samtools
- Paket mevcut değil
-
- sug: cdbfasta
- Constant DataBase indexing and retrieval tools for multi-FASTA files
-
- sug: diamond-aligner
- Paket mevcut değil
-
- sug: libdbd-mysql-perl
- Paket mevcut değil
-
- sug: libfile-which-perl
- Perl module for searching paths for executable programs
-
- sug: libparallel-forkmanager-perl
- Paket mevcut değil
-
- sug: libyaml-perl
- YAML Ain't Markup Language
-
- sug: python3-biopython
- Paket mevcut değil
augustus indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 2.000,1 kB | 10.856,0 kB | [dosya listesi] |
| arm64 | 1.715,1 kB | 10.617,0 kB | [dosya listesi] |