软件包：ngmlr（0.2.7+git20210816.a2a31fb+dfsg-2 以及其他的）

ngmlr 的相关链接

eLxr 补丁追踪网站

下载源码包 ngmlr：

维护小组：

外部的资源：

主页 [github.com]

相似软件包：

CoNvex Gap-cost alignMents for Long Reads

Ngmlr is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was designed to quickly and correctly align the reads, including those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping locations for a read and then a banded Smith- Waterman alignment algorithm to compute the final alignment. Ngmlr uses a convex gap cost model that penalizes gap extensions for longer gaps less than for shorter ones to compute precise alignments.

其他与 ngmlr 有关的软件包

依赖

推荐

建议

增强

dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
同时作为一个虚包由这些包填实： libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 11) [amd64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [arm64]
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

下载 ngmlr

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
amd64	0.2.7+git20210816.a2a31fb+dfsg-2+b1	673.7 kB	1,157.0 kB	[文件列表]
arm64	0.2.7+git20210816.a2a31fb+dfsg-2+b2	655.1 kB	1,173.0 kB	[文件列表]