eLxr packages [ bianca ]
[ aria ]
[ 原始碼： augur ]
套件：augur（20.0.0-1）
pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.
nextstrain is comprised of three components:
* fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences
其他與 augur 有關的套件
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- dep: fasttree
- 套件暫時不可用
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- dep: mafft
- 套件暫時不可用
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-bcbio-gff
- 套件暫時不可用
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- dep: python3-biopython
- 套件暫時不可用
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- dep: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
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- dep: python3-cvxopt
- 套件暫時不可用
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- dep: python3-dendropy
- 套件暫時不可用
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- dep: python3-ipdb
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- dep: python3-isodate
- 套件暫時不可用
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- dep: python3-jsonschema
- An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-packaging
- core utilities for python3 packages
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- dep: python3-pandas
- 套件暫時不可用
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- dep: python3-pyfastx
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- dep: python3-schedule
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-seaborn
- 套件暫時不可用
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- dep: python3-treetime (>= 0.9.4)
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- dep: python3-xopen (>= 1.7.0-1~)
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- dep: python3-zstandard
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- dep: raxml
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- dep: seqmagick
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- dep: vcftools
- 套件暫時不可用
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- rec: iqtree
- 套件暫時不可用