Paket: bifrost (1.3.1-1 und andere)

Links für bifrost

eLxr Patch-Überblick

Quellcode-Paket bifrost herunterladen:

Betreuer:

Externe Ressourcen:

Homepage [github.com]

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andere Pakete mit Bezug zu bifrost

hängt ab von

empfiehlt

schlägt vor

erweitert

dep: libbifrost0 (>= 1.3.1)

library for parallel construction, indexing and querying of de Bruijn graphs
dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

bifrost herunterladen

Download für alle verfügbaren Architekturen
Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1.3.1-1	500,0 kB	1.222,0 kB	[Liste der Dateien]
arm64	1.3.1-1+b1	486,1 kB	1.175,0 kB	[Liste der Dateien]