Pacote: bifrost (1.3.1-1 e outros)

Links para bifrost

Rastreador de patch eLxr

Baixe o pacote-fonte bifrost:

Mantenedores(as):

Fontes externas:

Pagina principal [github.com]

Pacotes similares:

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Outros pacotes relacionados a bifrost

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dep: libbifrost0 (>= 1.3.1)

library for parallel construction, indexing and querying of de Bruijn graphs
dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Download de bifrost

Baixe para todas as arquiteturas disponíveis
Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	1.3.1-1	500.0 kB	1,222.0 kB	[lista de arquivos]
arm64	1.3.1-1+b1	486.1 kB	1,175.0 kB	[lista de arquivos]