Paket: bifrost (1.3.1-1 och andra)

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Hemsida [github.com]

Liknande paket:

parallel construction, indexing and querying of de Bruijn graphs

Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andra paket besläktade med bifrost

beror

rekommenderar

föreslår

enhances

dep: libbifrost0 (>= 1.3.1)

library for parallel construction, indexing and querying of de Bruijn graphs
dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Hämta bifrost

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	1.3.1-1	500,0 kbyte	1.222,0 kbyte	[filförteckning]
arm64	1.3.1-1+b1	486,1 kbyte	1.175,0 kbyte	[filförteckning]