eLxr packages [ bianca ]
[ ソース: bifrost ]
パッケージ: bifrost (1.3.1-1 など)
parallel construction, indexing and querying of de Bruijn graphs
Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
その他の bifrost 関連パッケージ
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- dep: libbifrost0 (>= 1.3.1)
- library for parallel construction, indexing and querying of de Bruijn graphs
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- dep: libc6 (>= 2.34) [amd64]
- GNU C Library: Shared libraries
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime