Paketti: bowtie2 (2.5.4-1 ja muut)

Links for bowtie2

eLxr Patch Tracker

Imuroi lähdekoodipaketti bowtie2:

Ylläpitäjät:

External Resources:

Kotisivu [bowtie-bio.sourceforge.net]

Samankaltaisia paketteja:

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Muut pakettiin bowtie2 liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0) [arm64]

GCC support library

dep: libgcc-s1 (>= 3.4) [amd64]
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

sug: bowtie2-examples

Examples for bowtie2

Imuroi bowtie2

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.5.4-1+b2	1,469.7 kt	5,941.0 kt	[tiedostoluettelo]
arm64	2.5.4-1+b2	1,366.3 kt	5,321.0 kt	[tiedostoluettelo]