Pacote: bowtie2 (2.5.4-1 e outros)

Links para bowtie2

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Baixe o pacote-fonte bowtie2:

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Fontes externas:

Pagina principal [bowtie-bio.sourceforge.net]

Pacotes similares:

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Outros pacotes relacionados a bowtie2

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dep: libc6 (>= 2.38)

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
dep: libgcc-s1 (>= 3.0) [arm64]

GCC support library

dep: libgcc-s1 (>= 3.4) [amd64]
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

sug: bowtie2-examples

Examples for bowtie2

Download de bowtie2

Baixe para todas as arquiteturas disponíveis
Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	2.5.4-1+b2	1,469.7 kB	5,941.0 kB	[lista de arquivos]
arm64	2.5.4-1+b2	1,366.3 kB	5,321.0 kB	[lista de arquivos]