Paketti: sourmash (4.8.14-3 ja muut)

Links for sourmash

eLxr Patch Tracker

Imuroi lähdekoodipaketti sourmash:

Ylläpitäjät:

External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

tools for comparing DNA sequences with MinHash sketches

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).

sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.

These tools provide functionality previously handled by the 'khmer' package.

Muut pakettiin sourmash liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 4.2)

GCC support library
dep: librocksdb9.10 (>= 9.10.0)

persistent Key-Value Store for Flash and RAM Storage
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (>= 3~)
dep: python3-bitstring

Python module for manipulation of binary data (Python 3)
dep: python3-cachetools

extensible memoizing collections and decorators for Python 3
dep: python3-cffi-backend-api-max (>= 9729)

Paketti ei saatavilla
dep: python3-cffi-backend-api-min (<= 9729)

Paketti ei saatavilla
dep: python3-deprecation

Library to handle automated deprecations
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab
dep: python3-numpy

Python library for numerical computations (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-screed

short nucleotide read sequence utils in Python 3

Imuroi sourmash

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	4.8.14-3+b1	718.1 kt	2,498.0 kt	[tiedostoluettelo]
arm64	4.8.14-3+b1	652.3 kt	2,394.0 kt	[tiedostoluettelo]