eLxr packages [ bianca ]
[ Fonte: sourmash ]
Pacote: sourmash (4.8.14-3 e outros)
Links para sourmash
Baixe o pacote-fonte sourmash:
Mantenedores(as):
Fontes externas:
- Pagina principal [github.com]
Pacotes similares:
tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).
sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.
These tools provide functionality previously handled by the 'khmer' package.
Outros pacotes relacionados a sourmash
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb
-
- dep: libgcc-s1 (>= 4.2)
- GCC support library
-
- dep: librocksdb9.10 (>= 9.10.0)
- persistent Key-Value Store for Flash and RAM Storage
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-bitstring
- Python module for manipulation of binary data (Python 3)
-
- dep: python3-cachetools
- extensible memoizing collections and decorators for Python 3
-
- dep: python3-cffi-backend-api-max (>= 9729)
- Pacote não disponível
-
- dep: python3-cffi-backend-api-min (<= 9729)
- Pacote não disponível
-
- dep: python3-deprecation
- Library to handle automated deprecations
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
-
- dep: python3-numpy
- Python library for numerical computations (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-screed
- short nucleotide read sequence utils in Python 3
Download de sourmash
| Arquitetura | Versão | Tamanho do pacote | Tamanho instalado | Arquivos |
|---|---|---|---|---|
| amd64 | 4.8.14-3+b1 | 718.1 kB | 2,498.0 kB | [lista de arquivos] |
| arm64 | 4.8.14-3+b1 | 652.3 kB | 2,394.0 kB | [lista de arquivos] |