eLxr packages [ bianca ]
[ 源代码： sourmash ]
软件包：sourmash（4.8.14-3 以及其他的）
tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).
sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.
These tools provide functionality previously handled by the 'khmer' package.
其他与 sourmash 有关的软件包
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC support library
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- dep: librocksdb9.10 (>= 9.10.0)
- persistent Key-Value Store for Flash and RAM Storage
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
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- dep: python3-bitstring
- Python module for manipulation of binary data (Python 3)
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- dep: python3-cachetools
- extensible memoizing collections and decorators for Python 3
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- dep: python3-cffi-backend-api-max (>= 9729)
- 软件包暂时不可用
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- dep: python3-cffi-backend-api-min (<= 9729)
- 软件包暂时不可用
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- dep: python3-deprecation
- Library to handle automated deprecations
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-numpy
- Python library for numerical computations (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-screed
- short nucleotide read sequence utils in Python 3