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[ Pakiet źródłowy: sourmash ]
Pakiet: sourmash (4.8.14-3 i inne)
Odnośniki dla sourmash
Pobieranie pakietu źródłowego sourmash:
Opiekunowie:
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).
sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.
These tools provide functionality previously handled by the 'khmer' package.
Inne pakiety związane z sourmash
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 4.2)
- GCC support library
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- dep: librocksdb9.10 (>= 9.10.0)
- persistent Key-Value Store for Flash and RAM Storage
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
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- dep: python3-bitstring
- Python module for manipulation of binary data (Python 3)
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- dep: python3-cachetools
- extensible memoizing collections and decorators for Python 3
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- dep: python3-cffi-backend-api-max (>= 9729)
- Pakiet niedostępny
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- dep: python3-cffi-backend-api-min (<= 9729)
- Pakiet niedostępny
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- dep: python3-deprecation
- Library to handle automated deprecations
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-numpy
- Python library for numerical computations (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-screed
- short nucleotide read sequence utils in Python 3
Pobieranie sourmash
| Architektura | Wersja | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|---|
| amd64 | 4.8.14-3+b1 | 718,1 KiB | 2 498,0 KiB | [lista plików] |
| arm64 | 4.8.14-3+b1 | 652,3 KiB | 2 394,0 KiB | [lista plików] |