Pacote: pizzly (0.37.3+ds-9 e outros)

Links para pizzly

Rastreador de patch eLxr

Baixe o pacote-fonte pizzly:

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Pagina principal [github.com]

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Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Outros pacotes relacionados a pizzly

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dep: kallisto

near-optimal RNA-Seq quantification
dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
também um pacote virtual fornecido por libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 12) [amd64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [arm64]
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: python3-h5py

general-purpose Python interface to hdf5

Download de pizzly

Baixe para todas as arquiteturas disponíveis
Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	0.37.3+ds-9	285.5 kB	864.0 kB	[lista de arquivos]
arm64	0.37.3+ds-9+b2	262.0 kB	929.0 kB	[lista de arquivos]