Paket: pizzly (0.37.3+ds-9 och andra)

Länkar för pizzly

eLxr Patch Tracker

Hämta källkodspaketet pizzly:

Ansvariga:

Externa resurser:

Hemsida [github.com]

Liknande paket:

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Andra paket besläktade med pizzly

beror

rekommenderar

föreslår

enhances

dep: kallisto

near-optimal RNA-Seq quantification
dep: libc6 (>= 2.34) [amd64]

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.38) [arm64]
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 12) [amd64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [arm64]
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: python3-h5py

general-purpose Python interface to hdf5

Hämta pizzly

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.37.3+ds-9	285,5 kbyte	864,0 kbyte	[filförteckning]
arm64	0.37.3+ds-9+b2	262,0 kbyte	929,0 kbyte	[filförteckning]