eLxr packages [ bianca ]
[ aria ]
[ Source: augur ]
Paketti: augur (20.0.0-1)
Links for augur
Imuroi lähdekoodipaketti augur:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
pipeline components for real-time virus analysis
The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.
nextstrain is comprised of three components:
* fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences
Muut pakettiin augur liittyvät paketit
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- dep: fasttree
- Paketti ei saatavilla
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- dep: mafft
- Paketti ei saatavilla
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-bcbio-gff
- Paketti ei saatavilla
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- dep: python3-biopython
- Paketti ei saatavilla
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- dep: python3-boto3
- Python interface to Amazon's Web Services - Python 3.x
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- dep: python3-cvxopt
- Paketti ei saatavilla
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- dep: python3-dendropy
- Paketti ei saatavilla
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- dep: python3-ipdb
- Paketti ei saatavilla
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- dep: python3-isodate
- Paketti ei saatavilla
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- dep: python3-jsonschema
- An(other) implementation of JSON Schema (Draft 3, 4, 6, 7)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-packaging
- core utilities for python3 packages
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- dep: python3-pandas
- Paketti ei saatavilla
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- dep: python3-pyfastx
- Paketti ei saatavilla
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- dep: python3-schedule
- Paketti ei saatavilla
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: python3-seaborn
- Paketti ei saatavilla
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- dep: python3-treetime (>= 0.9.4)
- Paketti ei saatavilla
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- dep: python3-xopen (>= 1.7.0-1~)
- Paketti ei saatavilla
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- dep: python3-zstandard
- Paketti ei saatavilla
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- dep: raxml
- Paketti ei saatavilla
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- dep: seqmagick
- Paketti ei saatavilla
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- dep: vcftools
- Paketti ei saatavilla
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- rec: iqtree
- Paketti ei saatavilla
Imuroi augur
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 182.9 kt | 829.0 kt | [tiedostoluettelo] |