[ bianca ]
[ aria ]
[ Source: ariba ]
Paketti: ariba (2.14.6+ds-5 ja muut)
Links for ariba
Imuroi lähdekoodipaketti ariba:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Muut pakettiin ariba liittyvät paketit
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- Paketti ei saatavilla
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
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- dep: libfml0 (>= 0.1)
- Paketti ei saatavilla
-
- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libminimap0 (>= 0.2)
- Paketti ei saatavilla
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mash
- Paketti ei saatavilla
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- dep: mummer
- Paketti ei saatavilla
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-biopython
- Paketti ei saatavilla
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- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- Paketti ei saatavilla
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-pymummer
- Paketti ei saatavilla
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- dep: python3-pysam
- Paketti ei saatavilla
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: spades
- Paketti ei saatavilla
Imuroi ariba
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| amd64 | 2.14.6+ds-5+b1 | 1,909.9 kt | 20,451.0 kt | [tiedostoluettelo] |
| arm64 | 2.14.6+ds-5+b1 | 1,906.2 kt | 20,531.0 kt | [tiedostoluettelo] |