eLxr packages [ aria ]
[ bianca ]
[ 原始碼： ariba ]
套件：ariba（2.14.6+ds-5 以及其他的）
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
其他與 ariba 有關的套件
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- 套件暫時不可用
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
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- dep: libfml0 (>= 0.1)
- 套件暫時不可用
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libminimap0 (>= 0.2)
- 套件暫時不可用
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mash
- 套件暫時不可用
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- dep: mummer
- 套件暫時不可用
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-biopython
- 套件暫時不可用
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- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- 套件暫時不可用
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-pymummer
- 套件暫時不可用
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- dep: python3-pysam
- 套件暫時不可用
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: spades
- 套件暫時不可用