[ aria ]
[ bianca ]
[ 源代码: ariba ]
软件包:ariba(2.14.6+ds-5 以及其他的)
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
其他与 ariba 有关的软件包
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- 软件包暂时不可用
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
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- dep: libfml0 (>= 0.1)
- 软件包暂时不可用
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libminimap0 (>= 0.2)
- 软件包暂时不可用
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mash
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-
- dep: mummer
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-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
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- dep: python3-biopython
- 软件包暂时不可用
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- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- 软件包暂时不可用
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-pymummer
- 软件包暂时不可用
-
- dep: python3-pysam
- 软件包暂时不可用
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: spades
- 软件包暂时不可用